Modar internal command:

 residue

To mutate, or patch, or insert a residue.

  • Syntax
     
    residue <subcommand> <argument>  ...

  • Examples

    #mutate residue PROA 11

    residue mutate residue="proa 11" newresn="ALA"

     

    #insert a residue at PROA 12

    residue insert residue="proa 12" newresn="GLY"

     

    #patching

    residue patch  residue="proa 1"  presn="NTER"

    residue patch  residue="rnaa 1"  presn="5TER"

    residue patch  residue1="proa 1" \

                   residue2="proa 76" presn="LINK"

    residue patch  residue1="proa 36" \

                   residue2="prob 103" presn="DISU"


  • Subcommand
    • mutate

      To mutate a residue.
          Keywords:

      residue=<residue expr>

      Residue expression, please see “Selection expression” for more information.

      Newresn=<residue name>

      New residue type name

    • insert

      To insert or append a residue in given position.
          Keywords:

      residue=<residue expr>

      Residue expression

      Newresn=<residue name>

      New residue type name


    • patch
      To patch a residue, or make a link between two residues.
          Keywords:

      residue=<residue expr>

      residue1=<residue expr>

      residue2=<residue expr>

      Residue expression, for make link case patching need tow residues expression

      presn=<residue name>

      patching residue type name



  • Variables exported
    none



 

 

 

 

 

 

 

 

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